"Blind Alley": While the X-Men work to restore Xavier's Institute after its devastating destruction, Mystique manages to break free of her incarceration. She soon sets a plan in motion that leads Cyclops into a deadly trap.

"Power Surge": Jean Grey loses control of her powers, and the only one able to contain her is Rogue.

"The HeX Factor": A mentally unstable, but immensely powerful mutant called Wanda is abducted from a mental institution and becomes the newest Brotherhood member, much to the horror of her brother Pietro. The new Brotherhood defeats the X-Men single-handedly.

"Turn of the Rogue": While on a school geology field trip, Scott and Rogue realize that the schoolmates they thought they could trust have other plans. Now the two will have to work together in order to survive their rocky situation.

"Middleverse": When Rogue and Nightcrawler inadvertently stumble upon the abandoned lab of a mutant called Forge, Nightcrawler is accidentally sucked into another dimension by one of Forge's inventions. Nightcrawler discovers that Forge himself has been trapped in the dimension since the 70s! It'll take the help of the X-Men to get them back to the present!

"Rogue Recruit": After a young mutant named Rogue touches a fellow student and absorbs his energy and memories, she runs away from home, confused and frightened. Now it's open to Professor Xavier and his students to recruit Rogue and help her before Mystique can turn her against the X-Men.

"Mainstream": Now that the world knows about mutants, Professor Xavier urges the X-Men and the Brotherhood's return to school to convince their peers they pose no threat. However, the school's Principal Kelly has other plans for the student mutant population.

"The Stuff of Villains": When the Brotherhood is expelled from school with nowhere else to go, Magneto sends Gambit to get them to join his side. Meanwhile, Wanda gets her brother Pietro arrested and Magneto sends Gambit and his new recruits to break his son out of jail.

"Day Of Reckoning" Part Two: The X-Men are shocked when Professor X teams them up with the Brotherhood to stop them, but then, a shocking twist reveals that nothing was to be as it seemed to be.

"Day Of Reckoning" Part One: Anti-mutant racist Bolivar Trask abducts Wolverine and introduces him to his newest invention, the Sentinels. Meanwhile, Magneto wants to provoke all-out war between mankind and mutantkind and summons his Acolytes to create mayhem.

"X-Treme Measures": When the Morlocks create a new sports drink that's harmful to mutants, it finds its way into Spyke's hands at a Skateboarding Competition. To make matters worse, Spyke's powers are becoming more and more uncontrollable and his temper is following suit. Meanwhile Kitty learns to drive, horrifying her worried fellow mutants.

"Adrift": When Cyclops and Havok are on a boat tour, a great storm comes and nearly kills them.

"Shadow Dance": The Bayville High Sadie Hawkins dance arrives, and everybody is scrambling for dates. Jean is highly jealous of Scott's date. In the meanwhile, Forge constructs a device which augments Nightcrawler's teleportation, but is unaware that vicious monsters from Kurt's bamf dimension will now be able to enter Earth.

"Retreat": In order to help a depressive Beast out of his slump, Kitty arranges a field trip with the New Mutants. However, hunters catch Beast, thinking him to be Bigfoot, and the young mutants must save their teacher from life in captivity.

"Walk On The Wild Side": The female X-Men are fed up with playing second fiddle, and form a vigilante crime-fighting group. For a while, things go great, but in the end, an old enemy crosses their way.

"Self-Possessed": Rogue starts having trouble controlling her powers when all the abilities she's absorbed over the years begin to surface again. When she inadvertently absorbs Mystique's shape shifting abilities, Rogue begins to morph into the many mutants whose powers she's acquired, including the vicious Sabretooth. Now the X-Men have to defeat one of their own before Rogue does too much damage.

"Survival of the Fittest": Away from the institute, the X-Men are thrown in a survival training boot camp with the Brotherhood. While the young mutants are out of the picture, Mystique frees Cain Marko, the unstoppable Juggernaut, from his imprisonment in hopes of gaining access to Xavier's School. However, cooperation isn't on Juggernaut's mind when he takes off on a rampage of revenge against his half-brother.

"Shadowed Past": When Rogue starts dreaming about Nightcrawler's past, she becomes curious of their origin. As the dreams intensify, Rogue and Nightcrawler set off to learn the true secrets of who Kurt is and who his mother is!

"SpykeCam": For a school project, Spyke gets a video camera to document life as a teenager. While Spyke videotapes his fellow X-Men, Sabretooth decides the video camera is the perfect way to find Wolverine and Xavier's School along with it.

"Speed and Spyke": When Storm's nephew, Spyke, begins to develop his mutant powers, he decides he'd rather use his unusual abilities for revenge against a thief calling himself Quicksilver, rather than learn to harness his powers at Xavier's Institute.

"Mutant Crush": When hot-head Fred Dukes, The Blob, starts his first day of school, his girth and equally massive temper makes him one of the less popular guys in town. When Jean Grey tries to help him assimilate into his new surroundings, Blob mistakes her kindness for romance and tries to make her his girlfriend.